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Computational evolution of neural and morphological development : towards evolutionary developmental artificial intelligence
Jin, Yaochu, 1966-Singapore : Springer, 2023This book provides a basic yet unified overview of theory and methodologies for evolutionary developmental systems. Based on the authors extensive research into the synergies between various approaches to artificial intelligence including evolutionary computation, artificial neural networks, and systems biology, it also examines the inherent links between biological intelligence and artificial intelligence. The book begins with an introduction to computational algorithms used to understand and simulate biological evolution and development, including evolutionary algorithms, gene regulatory network models, multi-cellular models for neural and morphological development, and computational models of neural plasticity. Chap. 2 discusses important properties of biological gene regulatory systems, including network motifs, network connectivity, robustness and evolvability. Going a step further, Chap. 3 presents methods for synthesizing regulatory motifs from scratch and creating more complex regulatory dynamics by combining basic regulatory motifs using evolutionary algorithms. Multi-cellular growth models, which can be used to simulate either neural or morphological development, are presented in Chapters 4 and 5. Chap. 6 examines the synergies and coupling between neural and morphological evolution and development. In turn, Chap. 7 provides preliminary yet promising examples of how evolutionary developmental systems can help in self-organized pattern generation, referred to as morphogenetic self-organization, highlighting the great potentials of evolutionary developmental systems. Finally, Chap. 8 rounds out the book, stressing the importance and promise of the evolutionary developmental approach to artificial intelligence. Featuring a wealth of diagrams, graphs and charts to aid in comprehension, this book offers a valuable asset for graduate students, researchers and practitioners who are interested in pursuing a different approach to artificial intelligence
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Data-driven evolutionary optimization : integrating evolutionary computation, machine learning and data science
Jin, Yaochu, 1966-Cham, Switzerland : Springer, [2021]Intended for researchers and practitioners alike, this book covers carefully selected yet broad topics in optimization, machine learning, and metaheuristics. Written by world-leading academic researchers who are extremely experienced in industrial applications, this self-contained book is the first of its kind that provides comprehensive background knowledge, particularly practical guidelines, and state-of-the-art techniques. New algorithms are carefully explained, further elaborated with pseudocode or flowcharts, and full working source code is made freely available. This is followed by a presentation of a variety of data-driven single- and multi-objective optimization algorithms that seamlessly integrate modern machine learning such as deep learning and transfer learning with evolutionary and swarm optimization algorithms. Applications of data-driven optimization ranging from aerodynamic design, optimization of industrial processes, to deep neural architecture search are included.Intended for researchers and practitioners alike, this book covers carefully selected yet broad topics in optimization, machine learning, and metaheuristics. Written by world-leading academic researchers who are extremely experienced in industrial applications, this self-contained book is the first of its kind that provides comprehensive background knowledge, particularly practical guidelines, and state-of-the-art techniques. New algorithms are carefully explained, further elaborated with pseudocode or flowcharts, and full working source code is made freely available. This is followed by a presentation of a variety of data-driven single- and multi-objective optimization algorithms that seamlessly integrate modern machine learning such as deep learning and transfer learning with evolutionary and swarm optimization algorithms. Applications of data-driven optimization ranging from aerodynamic design, optimization of industrial processes, to deep neural architecture search are included.
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Fuzzy systems in bioinformatics and computational biology
Jin, Yaochu, 1966-Berlin : Springer-Verlag, ©2009.Biological systems are inherently stochastic and uncertain. Thus, research in bioinformatics, biomedical engineering and computational biology has to deal with a large amount of uncertainties. Fuzzy logic has shown to be a powerful tool in capturing different uncertainties in engineering systems. In recent years, fuzzy logic based modeling and analysis approaches are also becoming popular in analyzing biological data and modeling biological systems. Numerous research and application results have been reported that demonstrated the effectiveness of fuzzy logic in solving a wide range of biological problems found in bioinformatics, biomedical engineering, and computational biology. Contributed by leading experts world-wide, this edited book contains 16 chapters presenting representative research results on the application of fuzzy systems to genome sequence assembly, gene expression analysis, promoter analysis, cis-regulation logic analysis and synthesis, reconstruction of genetic and cellular networks, as well as biomedical problems, such as medical image processing, electrocardiogram data classification and anesthesia monitoring and control. This volume is a valuable reference for researchers, practitioners, as well as graduate students working in the field of bioinformstics, biomedical engineering and computational biology.Biological systems are inherently stochastic and uncertain. Thus, research in bioinformatics, biomedical engineering and computational biology has to deal with a large amount of uncertainties. Fuzzy logic has shown to be a powerful tool in capturing different uncertainties in engineering systems. In recent years, fuzzy logic based modeling and analysis approaches are also becoming popular in analyzing biological data and modeling biological systems. Numerous research and application results have been reported that demonstrated the effectiveness of fuzzy logic in solving a wide range of biological problems found in bioinformatics, biomedical engineering, and computational biology. Contributed by leading experts world-wide, this edited book contains 16 chapters presenting representative research results on the application of fuzzy systems to genome sequence assembly, gene expression analysis, promoter analysis, cis-regulation logic analysis and synthesis, reconstruction of genetic and cellular networks, as well as biomedical problems, such as medical image processing, electrocardiogram data classification and anesthesia monitoring and control. This volume is a valuable reference for researchers, practitioners, as well as graduate students working in the field of bioinformatics, biomedical engineering and computational biology.
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